3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03546

Details:

PFam ID : PF03546

PFam Domain Description : Treacher Collins syndrome protein Treacle

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 41

Average sequence length: 154.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03546	Q2FBJ5_MACMU_901_992	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03546	F1RL67_PIG_462_673	100

Sequence based PCA Plot of the family - PF03546 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=30 Length=8
Motif3 Start=21 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay