3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03544

Details:

PFam ID : PF03544

PFam Domain Description : Gram-negative bacterial tonB protein

Number of Sequence in 50% Dataset : 609

Number of Sequence in Full Dataset : 2232

Average sequence length: 76.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03544	C6VW31_DYAFD_69_138	65.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03544	C6VW31_DYAFD_69_138	100

Sequence based PCA Plot of the family - PF03544 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=18
Motif2 Start=13 Length=8
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay