3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03540

Details:

PFam ID : PF03540

PFam Domain Description : Transcription initiation factor TFIID 23-30kDa subunit

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 84

Average sequence length: 49.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03540	D8U7C9_VOLCA_25_89	69.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03540	A0DAV0_PARTE_32_83	100

Sequence based PCA Plot of the family - PF03540 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=17 Length=8
Motif2 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay