3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03537

Details:

PFam ID : PF03537

PFam Domain Description : TM1410 hypothetical-related protein

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 345

Average sequence length: 188.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03537	B2U950_RALPJ_70_330	84.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03537	F2IJ07_9FLAO_177_314	99.4

Sequence based PCA Plot of the family - PF03537 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=253 Length=8
Motif2 Start=60 Length=8
Motif3 Start=1 Length=8
Motif4 Start=133 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay