3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03530

Details:

PFam ID : PF03530

PFam Domain Description : Calcium-activated SK potassium channel

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 60

Average sequence length: 103.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03530	C4Q5X8_SCHMA_127_193	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03530	F1L3G9_ASCSU_65_192	100

Sequence based PCA Plot of the family - PF03530 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=51 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay