3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03529

Details:

PFam ID : PF03529

PFam Domain Description : Otx1 transcription factor

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 44

Average sequence length: 91.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03529	B6CYN3_SCAFL_3_181	28.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03529	OTX2_RAT_1_59	100

Sequence based PCA Plot of the family - PF03529 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=144 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay