3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03524

Details:

PFam ID : PF03524

PFam Domain Description : Conjugal transfer protein

Number of Sequence in 50% Dataset : 167

Number of Sequence in Full Dataset : 506

Average sequence length: 209.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03524	C7K307_ACEPA_100_169	88.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03524	Q75XB5_HELPY_228_491	100

Sequence based PCA Plot of the family - PF03524 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=25 Length=8
Motif3 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay