3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03522

Details:

PFam ID : PF03522

PFam Domain Description : K-Cl Co-transporter type 1 (KCC1)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 11

Average sequence length: 27.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03522	E6ZIM8_DICLA_472_744	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03522	Q4T7I7_TETNG_1066_1092	100

Sequence based PCA Plot of the family - PF03522 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay