3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03521

Details:

PFam ID : PF03521

PFam Domain Description : Kv2 voltage-gated K+ channel

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 23

Average sequence length: 202.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03521	E6ZIM8_DICLA_472_744	54.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03521	E6ZIM8_DICLA_472_744	100

Sequence based PCA Plot of the family - PF03521 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=17
Motif2 Start=1 Length=8
Motif3 Start=53 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay