3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03520

Details:

PFam ID : PF03520

PFam Domain Description : KCNQ voltage-gated potassium channel

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 98

Average sequence length: 162.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03520	B0KWB1_CALJA_102_280	65.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03520	C0JSV9_CIOIN_475_681	96.9

Sequence based PCA Plot of the family - PF03520 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=179 Length=8
Motif4 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay