3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03517

Details:

PFam ID : PF03517

PFam Domain Description : Nucleotide-sensitive chloride conductance regulator (ICln)

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 180

Average sequence length: 113.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03517	E5SJS0_TRISP_31_156	79.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03517	Q4RZI8_TETNG_33_88	100

Sequence based PCA Plot of the family - PF03517 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=30
Motif2 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay