3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03515

Details:

PFam ID : PF03515

PFam Domain Description : Colicin-like bacteriocin tRNase domain

Number of Sequence in 50% Dataset : 13

Number of Sequence in Full Dataset : 17

Average sequence length: 241.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03515	C6TGW0_SOYBN_95_196	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03515	C4T554_YERIN_1_322	81

Sequence based PCA Plot of the family - PF03515 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=5 Length=8
Motif2 Start=79 Length=8
Motif3 Start=29 Length=8
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay