3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03514

Details:

PFam ID : PF03514

PFam Domain Description : GRAS family transcription factor

Number of Sequence in 50% Dataset : 173

Number of Sequence in Full Dataset : 647

Average sequence length: 305.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03514	C6TGW0_SOYBN_95_196	81.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03514	D7THM5_VITVI_300_346	100

Sequence based PCA Plot of the family - PF03514 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=5 Length=17
Motif3 Start=446 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay