3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03513

Details:

PFam ID : PF03513

PFam Domain Description : Cloacin immunity protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 14

Average sequence length: 73.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03513	Q9KB21_BACHD_22_439	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03513	C3K1R6_PSEFS_2_83	100

Sequence based PCA Plot of the family - PF03513 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay