3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03512

Details:

PFam ID : PF03512

PFam Domain Description : Glycosyl hydrolase family 52

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 17

Average sequence length: 391.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03512	Q9KB21_BACHD_22_439	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03512	Q9KB21_BACHD_22_439	100

Sequence based PCA Plot of the family - PF03512 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=398 Length=8
Motif2 Start=371 Length=8
Motif3 Start=331 Length=8
Motif4 Start=309 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay