3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03510

Details:

PFam ID : PF03510

PFam Domain Description : 2C endopeptidase (C24) cysteine protease family

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 19

Average sequence length: 100.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03510	B2Y6C9_9CALI_820_942	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03510	Q6YIH4_9CALI_135_241	100

Sequence based PCA Plot of the family - PF03510 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay