3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03509

Details:

PFam ID : PF03509

PFam Domain Description : Gap junction alpha-8 protein (Cx50)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 7

Average sequence length: 58.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03509	Q8RRN3_HELPY_143_171	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03509	C7E643_DANRE_267_339	100

Sequence based PCA Plot of the family - PF03509 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay