3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03507

Details:

PFam ID : PF03507

PFam Domain Description : CagA exotoxin

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 153

Average sequence length: 100.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03507	Q8RRN3_HELPY_143_171	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03507	C4B6K0_HELPY_41_88	100

Sequence based PCA Plot of the family - PF03507 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay