3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03503

Details:

PFam ID : PF03503

PFam Domain Description : Chlamydia cysteine-rich outer membrane protein 3

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 6

Average sequence length: 44.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03503	F0T376_CHLP6_12_63	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03503	F0T376_CHLP6_12_63	100

Sequence based PCA Plot of the family - PF03503 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=25 Length=8
Motif3 Start=44 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay