3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03502

Details:

PFam ID : PF03502

PFam Domain Description : Nucleoside-specific channel-forming protein, Tsx

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 198

Average sequence length: 228.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03502	Q7P1X2_CHRVO_32_262	91.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03502	Q7P1X2_CHRVO_32_262	100

Sequence based PCA Plot of the family - PF03502 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=80 Length=8
Motif2 Start=183 Length=8
Motif3 Start=225 Length=14
Motif4 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay