3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03498

Details:

PFam ID : PF03498

PFam Domain Description : Cytolethal distending toxin A/C family

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 52

Average sequence length: 141.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03498	C4ULF6_YERRU_52_191	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03498	A1AB02_ECOK1_62_210	100

Sequence based PCA Plot of the family - PF03498 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay