3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03496

Details:

PFam ID : PF03496

PFam Domain Description : ADP-ribosyltransferase exoenzyme

Number of Sequence in 50% Dataset : 135

Number of Sequence in Full Dataset : 233

Average sequence length: 183.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03496	E1A1C6_9CAUD_377_510	85.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03496	F2HFM7_BACTU_2_103	100

Sequence based PCA Plot of the family - PF03496 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=78 Length=8
Motif2 Start=19 Length=8
Motif3 Start=7 Length=8
Motif4 Start=123 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay