3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03493

Details:

PFam ID : PF03493

PFam Domain Description : Calcium-activated BK potassium channel alpha subunit

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 123

Average sequence length: 97.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03493	B0WEW9_CULQU_466_562	79.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03493	F0W9P9_9STRA_264_387	100

Sequence based PCA Plot of the family - PF03493 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=14
Motif2 Start=1 Length=8
Motif3 Start=89 Length=8
Motif4 Start=56 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay