3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03486

Details:

PFam ID : PF03486

PFam Domain Description : HI0933-like protein

Number of Sequence in 50% Dataset : 205

Number of Sequence in Full Dataset : 1295

Average sequence length: 344.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03486	A6GZT8_FLAPJ_9_171	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03486	B8BN77_ORYSI_57_158	100

Sequence based PCA Plot of the family - PF03486 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=14
Motif2 Start=415 Length=34
Motif3 Start=36 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay