3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03485

Details:

PFam ID : PF03485

PFam Domain Description : Arginyl tRNA synthetase N terminal domain

Number of Sequence in 50% Dataset : 127

Number of Sequence in Full Dataset : 1494

Average sequence length: 86.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03485	D8SIZ2_SELML_1_49	95.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03485	D1NBN6_9BACT_7_84	100

Sequence based PCA Plot of the family - PF03485 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=46 Length=11
Motif4 Start=107 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay