3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03484

Details:

PFam ID : PF03484

PFam Domain Description : tRNA synthetase B5 domain

Number of Sequence in 50% Dataset : 111

Number of Sequence in Full Dataset : 1527

Average sequence length: 70.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03484	D2PM90_KRIFD_406_527	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03484	D2PM90_KRIFD_406_527	100

Sequence based PCA Plot of the family - PF03484 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=41 Length=8
Motif4 Start=26 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay