3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03483

Details:

PFam ID : PF03483

PFam Domain Description : B3/4 domain

Number of Sequence in 50% Dataset : 109

Number of Sequence in Full Dataset : 1700

Average sequence length: 165.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03483	A8PX34_MALGO_105_181	77.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03483	E1PS21_MYCFJ_5_101	99.4

Sequence based PCA Plot of the family - PF03483 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=79 Length=8
Motif2 Start=5 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay