3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03480

Details:

PFam ID : PF03480

PFam Domain Description : Bacterial extracellular solute-binding protein, family 7

Number of Sequence in 50% Dataset : 704

Number of Sequence in Full Dataset : 2689

Average sequence length: 278.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03480	B5KAR9_9RHOB_1_76	90.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03480	A0P3T7_9RHOB_35_167	100

Sequence based PCA Plot of the family - PF03480 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=51 Length=8
Motif3 Start=22 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay