3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03477

Details:

PFam ID : PF03477

PFam Domain Description : ATP cone domain

Number of Sequence in 50% Dataset : 155

Number of Sequence in Full Dataset : 2019

Average sequence length: 88.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03477	A5ZMQ9_9FIRM_5_38	66.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03477	D6A9W8_9ACTO_58_114	98.6

Sequence based PCA Plot of the family - PF03477 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=80 Length=8
Motif3 Start=1 Length=8
Motif4 Start=99 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay