3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03476

Details:

PFam ID : PF03476

PFam Domain Description : MOSC N-terminal beta barrel domain

Number of Sequence in 50% Dataset : 231

Number of Sequence in Full Dataset : 730

Average sequence length: 118.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03476	C5PJI2_COCP7_84_263	96.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03476	C5PJI2_COCP7_84_263	100

Sequence based PCA Plot of the family - PF03476 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=17
Motif2 Start=171 Length=8
Motif3 Start=7 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay