3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03473

Details:

PFam ID : PF03473

PFam Domain Description : MOSC domain

Number of Sequence in 50% Dataset : 215

Number of Sequence in Full Dataset : 1612

Average sequence length: 131.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03473	E0XZL0_9PROT_14_71	82.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03473	D4KEP9_9FIRM_22_83	99.9

Sequence based PCA Plot of the family - PF03473 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=130 Length=14
Motif2 Start=16 Length=14
Motif3 Start=108 Length=8
Motif4 Start=96 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay