3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03471

Details:

PFam ID : PF03471

PFam Domain Description : Transporter associated domain

Number of Sequence in 50% Dataset : 387

Number of Sequence in Full Dataset : 2756

Average sequence length: 80.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03471	C6YSQ0_9GAMM_350_425	80.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03471	E5U7L2_ALCXX_207_259	100

Sequence based PCA Plot of the family - PF03471 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=16 Length=8
Motif2 Start=2 Length=11
Motif3 Start=49 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay