3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03470

Details:

PFam ID : PF03470

PFam Domain Description : XS zinc finger domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 41

Average sequence length: 40.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03470	Q8LSJ9_MAIZE_43_83	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03470	Q8LSJ9_MAIZE_43_83	67

Sequence based PCA Plot of the family - PF03470 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay