3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03469

Details:

PFam ID : PF03469

PFam Domain Description : XH domain

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 72

Average sequence length: 117.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03469	A2YSD3_ORYSI_1_63	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03469	D7KRQ3_ARALL_72_207	100

Sequence based PCA Plot of the family - PF03469 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=52 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay