3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03468

Details:

PFam ID : PF03468

PFam Domain Description : XS domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 97

Average sequence length: 116.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03468	D8SSV7_SELML_10_120	88.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03468	C5XQ09_SORBI_170_288	100

Sequence based PCA Plot of the family - PF03468 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=5 Length=17
Motif3 Start=67 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay