3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03466

Details:

PFam ID : PF03466

PFam Domain Description : LysR substrate binding domain

Number of Sequence in 50% Dataset : 7682

Number of Sequence in Full Dataset : 25687

Average sequence length: 202.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03466	C5EEX5_9FIRM_86_316	81.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03466	B1KQT0_SHEWM_89_281	99.8

Sequence based PCA Plot of the family - PF03466 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=191 Length=8
Motif3 Start=48 Length=8
Motif4 Start=80 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay