3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03464

Details:

PFam ID : PF03464

PFam Domain Description : eRF1 domain 2

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 406

Average sequence length: 128.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03464	C1FIQ7_MICSR_139_277	77.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03464	F2E5G2_HORVD_152_272	100

Sequence based PCA Plot of the family - PF03464 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=104 Length=8
Motif3 Start=5 Length=8
Motif4 Start=66 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay