3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03463

Details:

PFam ID : PF03463

PFam Domain Description : eRF1 domain 1

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 406

Average sequence length: 129.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03463	B5XEP5_SALSA_1_83	79.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03463	A8PSH4_MALGO_1_187	56

Sequence based PCA Plot of the family - PF03463 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=24 Length=17
Motif3 Start=153 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay