3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03461

Details:

PFam ID : PF03461

PFam Domain Description : TRCF domain

Number of Sequence in 50% Dataset : 147

Number of Sequence in Full Dataset : 1149

Average sequence length: 99.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03461	B9TCC6_RICCO_1_64	98.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03461	Q83N19_TROWT_1140_1244	100

Sequence based PCA Plot of the family - PF03461 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=56 Length=8
Motif2 Start=19 Length=8
Motif3 Start=2 Length=11
Motif4 Start=40 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay