3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03460

Details:

PFam ID : PF03460

PFam Domain Description : Nitrite/Sulfite reductase ferredoxin-like half domain

Number of Sequence in 50% Dataset : 102

Number of Sequence in Full Dataset : 4323

Average sequence length: 66.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03460	D6UVY1_9BACT_249_314	64.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03460	F0QUQ1_VULM7_72_142	97.1

Sequence based PCA Plot of the family - PF03460 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=55 Length=8
Motif2 Start=19 Length=8
Motif3 Start=7 Length=11
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay