3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03459

Details:

PFam ID : PF03459

PFam Domain Description : TOBE domain

Number of Sequence in 50% Dataset : 226

Number of Sequence in Full Dataset : 1726

Average sequence length: 62.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03459	E8ZN03_CLOB0_1_56	50.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03459	E8R8K5_DESM0_304_361	94.7

Sequence based PCA Plot of the family - PF03459 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=24
Motif2 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay