3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03457

Details:

PFam ID : PF03457

PFam Domain Description : Helicase associated domain

Number of Sequence in 50% Dataset : 305

Number of Sequence in Full Dataset : 645

Average sequence length: 69.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03457	Q00TC6_OSTTA_15_44	97.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03457	Q013I1_OSTTA_263_341	99.6

Sequence based PCA Plot of the family - PF03457 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=60 Length=8
Motif3 Start=17 Length=11
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay