3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03456

Details:

PFam ID : PF03456

PFam Domain Description : uDENN domain

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 282

Average sequence length: 64.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03456	E1Z9J3_9CHLO_49_100	97.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03456	B8C8Y1_THAPS_427_509	100

Sequence based PCA Plot of the family - PF03456 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=50 Length=11
Motif2 Start=10 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay