3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03454

Details:

PFam ID : PF03454

PFam Domain Description : MoeA C-terminal region (domain IV)

Number of Sequence in 50% Dataset : 254

Number of Sequence in Full Dataset : 1562

Average sequence length: 71.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03454	A8MCQ7_CALMQ_341_412	73.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03454	B6WUI7_9DELT_338_425	100

Sequence based PCA Plot of the family - PF03454 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=13 Length=17
Motif2 Start=1 Length=8
Motif3 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay