3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03453

Details:

PFam ID : PF03453

PFam Domain Description : MoeA N-terminal region (domain I and II)

Number of Sequence in 50% Dataset : 326

Number of Sequence in Full Dataset : 1833

Average sequence length: 161.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03453	F0V755_NEOCA_174_256	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03453	A6GFE0_9DELT_11_219	100

Sequence based PCA Plot of the family - PF03453 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=173 Length=11
Motif2 Start=116 Length=26
Motif3 Start=66 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay