3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03452

Details:

PFam ID : PF03452

PFam Domain Description : Anp1

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 154

Average sequence length: 256.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03452	A6R7L7_AJECN_11_101	63.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03452	F0YHV5_9STRA_58_325	100

Sequence based PCA Plot of the family - PF03452 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=52 Length=11
Motif3 Start=176 Length=8
Motif4 Start=135 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay