3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03451

Details:

PFam ID : PF03451

PFam Domain Description : HELP motif

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 147

Average sequence length: 66.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03451	D0MWG7_PHYIT_270_351	56.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03451	F1N7B8_BOVIN_1_32	100

Sequence based PCA Plot of the family - PF03451 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay