3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03450

Details:

PFam ID : PF03450

PFam Domain Description : CO dehydrogenase flavoprotein C-terminal domain

Number of Sequence in 50% Dataset : 245

Number of Sequence in Full Dataset : 1650

Average sequence length: 98.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03450	C0QMF6_DESAH_28_94	59.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03450	E9CA90_9EUKA_524_659	100

Sequence based PCA Plot of the family - PF03450 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=127 Length=8
Motif3 Start=118 Length=8
Motif4 Start=68 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay