3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03449

Details:

PFam ID : PF03449

PFam Domain Description : Transcription elongation factor, N-terminal

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 1109

Average sequence length: 73.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03449	C4FFT0_9BIFI_3_44	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03449	Q6MF39_PARUW_568_642	99.8

Sequence based PCA Plot of the family - PF03449 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=45 Length=8
Motif2 Start=14 Length=8
Motif3 Start=59 Length=8
Motif4 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay