3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03448

Details:

PFam ID : PF03448

PFam Domain Description : MgtE intracellular N domain

Number of Sequence in 50% Dataset : 307

Number of Sequence in Full Dataset : 1182

Average sequence length: 99.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03448	D0WHI2_9ACTN_1_42	65.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03448	E3H7U7_ILYPC_8_133	100

Sequence based PCA Plot of the family - PF03448 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=22 Length=8
Motif2 Start=13 Length=8
Motif3 Start=4 Length=8
Motif4 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay